LCFilter.h File Reference

#include "arg_parser.h"
#include "Filter.h"

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Classes
class	LCFilter
	A filter to weed out reads with Low Complexity (LC) sections. More...
Typedefs
typedef std::pair< int, int >	DummyESTInfo
	Shortcut typedef for std::pair<int, int>.

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Typedef Documentation

std::pair< int, SMList > DummyESTInfo

Shortcut typedef for std::pair<int, int>.

This typedef is a shortcut for referring to a pair of integers that hold information about dummy ESTs created, used, and finally removed by this filter. The pair of information is used as follows:

1. The first entry is an int that indicates the index of the dummy EST in the global EST list.

2. The second entry is another integer hat contains the ID of the cluster to which other ESTs that are sufficiently close to the dummy EST must be added.

Definition at line 63 of file LCFilter.h.