, including all inherited members.
| ADD_EST enum value | MSTClusterMaker | |
| addDummyCluster(const std::string name) | MSTClusterMaker | [virtual] |
| addEST(const int clusterID, const int estIdx) | MSTClusterMaker | [virtual] |
| addMoreChildESTs(const int parentESTidx, int &estToAdd, float &metric, int &alignmentData, int &directionData, int &pendingESTs) | MSTClusterMaker | [protected] |
| analyze(const int otherEST) | TransMSTClusterMaker | [protected, virtual] |
| analyzeCount | TransMSTClusterMaker | [private] |
| analyzer | ClusterMaker | [protected] |
| argsList | MSTClusterMaker | [protected, static] |
| badMetric | TransMSTClusterMaker | [private, static] |
| buildAndShowClusters() | MSTClusterMaker | [protected, virtual] |
| cache | MSTClusterMaker | [protected] |
| cacheSize | MSTClusterMaker | [protected, static] |
| cacheType | MSTClusterMaker | [protected, static] |
| clsThreshold | MSTClusterMaker | [protected, static] |
| ClusterMaker(const std::string &name, ESTAnalyzer *analyzer, const int refESTidx, const std::string &outputFileName) | ClusterMaker | [protected] |
| ClusterMakerFactory class | TransMSTClusterMaker | [friend] |
| COMPUTE_MAX_SIMILARITY_REQUEST enum value | MSTClusterMaker | |
| COMPUTE_SIMILARITY_REQUEST enum value | MSTClusterMaker | |
| COMPUTE_TOTAL_ANALYSIS_COUNT enum value | MSTClusterMaker | |
| computeNextESTidx(int &parentESTidx, int &estToAdd, float &similarity, int &alignmentData, int &directionData) const | MSTClusterMaker | [protected] |
| currRefESTidx | TransMSTClusterMaker | [private] |
| displayStats(std::ostream &os) | TransMSTClusterMaker | [virtual] |
| dontCluster | MSTClusterMaker | [protected, static] |
| estAdded(const int estIdx, std::vector< int > &repopulateList) | MSTClusterMaker | [protected] |
| getAnalyzer() const | ClusterMaker | [inline] |
| getOwnedESTidx(int &startIndex, int &endIndex) | MSTClusterMaker | [protected] |
| getOwnerProcess(const int estIdx) const | MSTClusterMaker | [protected] |
| guiPrint | MSTClusterMaker | [protected, static] |
| hasValidSMEntry(const SMList &list) const | MSTClusterMaker | [protected] |
| initialize() | TransMSTClusterMaker | [protected, virtual] |
| inputMSTFile | MSTClusterMaker | [protected, static] |
| makeClusters() | MSTClusterMaker | [virtual] |
| manager() | MSTClusterMaker | [protected, virtual] |
| managerUpdateCaches(int estIdx, const bool refreshEST=true) | MSTClusterMaker | [protected] |
| MAX_SIMILARITY_RESPONSE enum value | MSTClusterMaker | |
| maxUse | MSTClusterMaker | [protected, static] |
| MessageTags enum name | MSTClusterMaker | |
| metricCache | TransMSTClusterMaker | [private] |
| MSTClusterMaker(ESTAnalyzer *analyzer, const int refESTidx, const std::string &outputFile) | MSTClusterMaker | [protected] |
| name | ClusterMaker | [protected] |
| noCacheRepop | MSTClusterMaker | [protected, static] |
| outputFileName | ClusterMaker | [protected] |
| outputMSTFile | MSTClusterMaker | [protected, static] |
| parseArguments(int &argc, char **argv) | MSTClusterMaker | [virtual] |
| populateCache(const int estIdx, SMList *metricList=NULL) | TransMSTClusterMaker | [protected, virtual] |
| populateMST() | MSTClusterMaker | [protected, virtual] |
| prettyPrint | MSTClusterMaker | [protected, static] |
| processMetricList(SMList &metricList) | TransMSTClusterMaker | [protected] |
| progFileName | MSTClusterMaker | [protected, static] |
| progressFile | MSTClusterMaker | [protected] |
| pruneMetricEntries(const SMList &list, SMList &entries) | TransMSTClusterMaker | [protected] |
| refESTidx | ClusterMaker | [protected] |
| REPOPULATE_REQUEST enum value | MSTClusterMaker | |
| sendToWorkers(int data, const int tag) const | MSTClusterMaker | [protected] |
| showArguments(std::ostream &os) | MSTClusterMaker | [virtual] |
| SIMILARITY_COMPUTATION_DONE enum value | MSTClusterMaker | |
| SIMILARITY_LIST enum value | MSTClusterMaker | |
| strictOrder | MSTClusterMaker | [protected, static] |
| successCount | TransMSTClusterMaker | [private] |
| TRANSITIVITY_LIST enum value | MSTClusterMaker | |
| TransMSTClusterMaker(ESTAnalyzer *analyzer, const int refESTidx, const std::string &outputFile) | TransMSTClusterMaker | [protected] |
| updateProgress(const int estsAnalyzed, const int totalESTcount) | MSTClusterMaker | [protected] |
| worker() | MSTClusterMaker | [protected, virtual] |
| workerProcessRequests() | MSTClusterMaker | [protected] |
| ~ClusterMaker() | ClusterMaker | [virtual] |
| ~MSTClusterMaker() | MSTClusterMaker | [virtual] |
| ~TransMSTClusterMaker() | TransMSTClusterMaker | [virtual] |
