, including all inherited members.
| ADD_EST enum value | PMSTClusterMaker | |
| addDummyCluster(const std::string name)=0 | ClusterMaker | [pure virtual] |
| addEST(const int clusterID, const int estIdx)=0 | ClusterMaker | [pure virtual] |
| addMoreChildESTs(const int parentESTidx, int &estToAdd, float &metric, int &alignmentData, int &pendingESTs) | PMSTClusterMaker | [protected] |
| analyze(const int otherEST) | PMSTClusterMaker | [protected, virtual] |
| analyzer | ClusterMaker | [protected] |
| argsList | PMSTClusterMaker | [protected, static] |
| cache | PMSTClusterMaker | [protected] |
| cacheSize | PMSTClusterMaker | [protected, static] |
| cacheType | PMSTClusterMaker | [protected, static] |
| ClusterMaker(const std::string &name, ESTAnalyzer *analyzer, const int refESTidx, const std::string &outputFileName) | ClusterMaker | [protected] |
| ClusterMakerFactory class | PMSTClusterMaker | [friend] |
| COMPUTE_MAX_SIMILARITY_REQUEST enum value | PMSTClusterMaker | |
| COMPUTE_SIMILARITY_REQUEST enum value | PMSTClusterMaker | |
| COMPUTE_TOTAL_ANALYSIS_COUNT enum value | PMSTClusterMaker | |
| computeNextESTidx(int &parentESTidx, int &estToAdd, float &similarity, int &alignmentData) const | PMSTClusterMaker | [protected] |
| displayStats(std::ostream &os) | PMSTClusterMaker | [virtual] |
| dontCluster | PMSTClusterMaker | [protected, static] |
| estAdded(const int estIdx, std::vector< int > &repopulateList) | PMSTClusterMaker | [protected] |
| getAnalyzer() const | ClusterMaker | [inline] |
| getOwnedESTidx(const int estIdx, int &startIndex, int &endIndex) | PMSTClusterMaker | [protected] |
| getOwnedPartition() | PMSTClusterMaker | [protected] |
| getOwnerProcess(const int estIdx) const | PMSTClusterMaker | [protected] |
| hasValidSMEntry(const SMList &list) const | PMSTClusterMaker | [protected] |
| initialize()=0 | ClusterMaker | [pure virtual] |
| inputMSTFile | PMSTClusterMaker | [protected, static] |
| makeClusters() | PMSTClusterMaker | [virtual] |
| manager() | PMSTClusterMaker | [protected, virtual] |
| managerUpdateCaches(int estIdx, const bool refreshEST=true) | PMSTClusterMaker | [protected] |
| MAX_SIMILARITY_RESPONSE enum value | PMSTClusterMaker | |
| maxUse | PMSTClusterMaker | [protected, static] |
| mergeManager(MSTCluster &rootCluster, const int threshold) | PMSTClusterMaker | [protected] |
| mergeWorker() | PMSTClusterMaker | [protected] |
| MessageTags enum name | PMSTClusterMaker | |
| mst | PMSTClusterMaker | [private] |
| name | ClusterMaker | [protected] |
| noCacheRepop | PMSTClusterMaker | [protected, static] |
| outputFileName | ClusterMaker | [protected] |
| outputMSTFile | PMSTClusterMaker | [protected, static] |
| parseArguments(int &argc, char **argv) | PMSTClusterMaker | [virtual] |
| pData | PMSTClusterMaker | [protected] |
| percentile | PMSTClusterMaker | [protected, static] |
| PMSTClusterMaker(ESTAnalyzer *analyzer, const int refESTidx, const std::string &outputFile) | PMSTClusterMaker | [protected] |
| populateCache(const int estIdx, SMList *metricList=NULL) | PMSTClusterMaker | [protected, virtual] |
| prettyPrint | PMSTClusterMaker | [protected, static] |
| refESTidx | ClusterMaker | [protected] |
| REPOPULATE_REQUEST enum value | PMSTClusterMaker | |
| sendToWorkers(int data, const int tag) const | PMSTClusterMaker | [protected] |
| showArguments(std::ostream &os) | PMSTClusterMaker | [virtual] |
| SIMILARITY_COMPUTATION_DONE enum value | PMSTClusterMaker | |
| SIMILARITY_LIST enum value | PMSTClusterMaker | |
| strictOrder | PMSTClusterMaker | [protected, static] |
| TRANSITIVITY_LIST enum value | PMSTClusterMaker | |
| worker() | PMSTClusterMaker | [protected, virtual] |
| workerProcessRequests() | PMSTClusterMaker | [protected] |
| ~ClusterMaker() | ClusterMaker | [virtual] |
| ~PMSTClusterMaker() | PMSTClusterMaker | [virtual] |
