FWAnalyzer Member List

This is the complete list of members for FWAnalyzer, including all inherited members.

analyze()	FWAnalyzer	[virtual]
ESTAnalyzer::analyze(const int otherEST, const bool useHeuristics=true, const bool useHeavyWeight=true)	ESTAnalyzer
analyzeFrame(const std::string &refFrame, const std::string &otherFrame, const int wordSize)	FWAnalyzer	[protected, virtual]
analyzerName	ESTAnalyzer	[protected]
argumentFrameSize	FWAnalyzer	[protected, static]
chain	ESTAnalyzer	[protected]
commonArgsList	FWAnalyzer	[private, static]
compareMetrics(const float metric1, const float metric2) const	ESTAnalyzer	[inline, virtual]
displayStats(std::ostream &os)	ESTAnalyzer	[inline, virtual]
dumpEST(ResultLog &log, const EST *est, const bool isReference=false)	FWAnalyzer	[protected, virtual]
dumpESTList(const std::vector< EST * > &estList, const EST *refEST, ResultLog &log)	FWAnalyzer	[protected, virtual]
dumpHeader(ResultLog &log, const double mean, const double variance)	FWAnalyzer	[protected, virtual]
ESTAnalyzer(const std::string &analyzerName, const int refESTidx, const std::string &outputFileName)	ESTAnalyzer	[protected]
estFileName	ESTAnalyzer	[protected, static]
frameSize	FWAnalyzer	[protected]
FWAnalyzer(const std::string &analyzerName, const int refESTidx, const std::string &outputFile)	FWAnalyzer	[protected]
getAlignmentData(int &alignmentData)	ESTAnalyzer	[inline, virtual]
getFrame(const EST *est, bool start=true)	FWAnalyzer
getHeuristicChain() const	ESTAnalyzer	[inline, virtual]
getInputFileName() const	ESTAnalyzer	[inline]
getInvalidMetric() const	ESTAnalyzer	[inline, virtual]
getMetric(const int otherEST)	FWAnalyzer	[protected, virtual]
getName() const =0	ESTAnalyzer	[pure virtual]
getPreferredDummyESTLength() const	FWAnalyzer	[inline, virtual]
getValidMetric() const	ESTAnalyzer	[inline, virtual]
htmlLog	ESTAnalyzer	[protected, static]
initialize()	FWAnalyzer	[virtual]
isDistanceMetric() const	ESTAnalyzer	[inline, virtual]
loadFASTAFile(const char *fileName, const bool unpopulate=false)	ESTAnalyzer
noMaskBases	ESTAnalyzer	[protected, static]
outputFileName	ESTAnalyzer	[protected]
parseArguments(int &argc, char **argv)	FWAnalyzer	[virtual]
readAhead	ESTAnalyzer	[protected, static]
referenceFrame	FWAnalyzer	[protected]
refESTidx	ESTAnalyzer	[protected]
setHeuristicChain(HeuristicChain *chain)	ESTAnalyzer	[virtual]
setReferenceEST(const int estIdx)	FWAnalyzer	[virtual]
showArguments(std::ostream &os)	FWAnalyzer	[virtual]
wordSize	FWAnalyzer	[protected, static]
~ESTAnalyzer()	ESTAnalyzer	[virtual]
~FWAnalyzer()	FWAnalyzer	[virtual]