ESTAnalyzer Member List

This is the complete list of members for ESTAnalyzer, including all inherited members.

analyze(const int otherEST, const bool useHeuristics=true, const bool useHeavyWeight=true)	ESTAnalyzer
analyze()=0	ESTAnalyzer	[pure virtual]
analyzerName	ESTAnalyzer	[protected]
chain	ESTAnalyzer	[protected]
commonArgsList	ESTAnalyzer	[private, static]
compareMetrics(const float metric1, const float metric2) const	ESTAnalyzer	[inline, virtual]
displayStats(std::ostream &os)	ESTAnalyzer	[inline, virtual]
ESTAnalyzer(const std::string &analyzerName, const int refESTidx, const std::string &outputFileName)	ESTAnalyzer	[protected]
estFileName	ESTAnalyzer	[protected, static]
getAlignmentData(int &alignmentData)	ESTAnalyzer	[inline, virtual]
getHeuristicChain() const	ESTAnalyzer	[inline, virtual]
getInputFileName() const	ESTAnalyzer	[inline]
getInvalidMetric() const	ESTAnalyzer	[inline, virtual]
getMetric(const int otherEST)=0	ESTAnalyzer	[protected, pure virtual]
getName() const =0	ESTAnalyzer	[pure virtual]
getPreferredDummyESTLength() const	ESTAnalyzer	[inline, virtual]
getValidMetric() const	ESTAnalyzer	[inline, virtual]
htmlLog	ESTAnalyzer	[protected, static]
initialize()=0	ESTAnalyzer	[pure virtual]
isDistanceMetric() const	ESTAnalyzer	[inline, virtual]
loadFASTAFile(const char *fileName, const bool unpopulate=false)	ESTAnalyzer
noMaskBases	ESTAnalyzer	[protected, static]
operator=(const ESTAnalyzer &src)	ESTAnalyzer	[private]
outputFileName	ESTAnalyzer	[protected]
parseArguments(int &argc, char **argv)	ESTAnalyzer	[virtual]
readAhead	ESTAnalyzer	[protected, static]
refESTidx	ESTAnalyzer	[protected]
setHeuristicChain(HeuristicChain *chain)	ESTAnalyzer	[virtual]
setReferenceEST(const int estIdx)=0	ESTAnalyzer	[pure virtual]
showArguments(std::ostream &os)	ESTAnalyzer	[virtual]
~ESTAnalyzer()	ESTAnalyzer	[virtual]