EST Member List
This is the complete list of members for
EST, including all inherited members.
| create(const int id, const char *info, const char *sequence=NULL, const long offset=-1) | EST | [static] |
| create(FILE *fastaFile, int &lineNum, const bool maskBases=true) | EST | [static] |
| customData | EST | [protected] |
| deleteAllESTs() | EST | [static] |
| deleteLastESTs(const int count) | EST | [static] |
| dumpEST(std::ostream &os) | EST | |
| dumpESTList(std::ostream &os) | EST | [static] |
| dumpESTList(std::ostream &os, const bool processed) | EST | [static] |
| duplicate(const char *src) | EST | [private, static] |
| EST(const int id, const char *info, const char *sequence=NULL, const int offset=-1) | EST | |
| EST() | EST | [private] |
| estList | EST | [private, static] |
| getCustomData() | EST | [inline] |
| getCustomData() const | EST | [inline] |
| getEST(const int estIdx) | EST | [inline, static] |
| getESTCount() | EST | [inline, static] |
| getESTList() | EST | [inline, static] |
| getID() const | EST | [inline] |
| getInfo() const | EST | [inline] |
| getLine(FILE *fp) | EST | [static] |
| getMaxESTLen() | EST | [static] |
| getProcessedESTCount() | EST | [static] |
| getSequence() const | EST | [inline] |
| getSimilarity() const | EST | [inline] |
| hasBeenProcessed() const | EST | [inline] |
| id | EST | [protected] |
| info | EST | [protected] |
| maxESTlen | EST | [protected, static] |
| normalizeBases(std::string &sequence, const bool maskBases=true) | EST | [private, static] |
| offset | EST | [protected] |
| operator=(const EST &src) | EST | [private] |
| processed | EST | [protected] |
| repopulate(FILE *fastaFile) | EST | |
| sequence | EST | [protected] |
| setCustomData(std::auto_ptr< ESTCustomData > &src) | EST | [inline] |
| setCustomData(ESTCustomData *src) | EST | [inline] |
| setProcessed(const bool processedFlag) | EST | [inline] |
| setSimilarity(const float sim) | EST | [inline] |
| similarity | EST | [protected] |
| unpopulate() | EST | |
| ~EST() | EST | |
