PMSTHeapCache.cpp

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#ifndef PMST_HEAP_CACHE_CPP
#define PMST_HEAP_CACHE_CPP

//--------------------------------------------------------------------
//
// This file is part of PEACE.
// 
// PEACE is free software: you can redistribute it and/or modify it
// under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
// 
// PEACE is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// General Public License for more details.
// 
// You should have received a copy of the GNU General Public License
// along with PEACE.  If not, see <http://www.gnu.org/licenses/>.
// 
// Miami University makes no representations or warranties about the
// suitability of the software, either express or implied, including
// but not limited to the implied warranties of merchantability,
// fitness for a particular purpose, or non-infringement.  Miami
// University shall not be liable for any damages suffered by licensee
// as a result of using, result of using, modifying or distributing
// this software or its derivatives.
//
// By using or copying this Software, Licensee agrees to abide by the
// intellectual property laws, and all other applicable laws of the
// U.S., and the terms of GNU General Public License (version 3).
//
// Authors:   Dhananjai M. Rao          raodm@muohio.edu
//
//---------------------------------------------------------------------

#include "PMSTHeapCache.h"

PMSTHeapCache::PMSTHeapCache(const int totalESTCount,
                             const int startESTidx,
                             const int numOwnESTs,
                             const ESTAnalyzer *estAnalyzer):
    MSTHeapCache(totalESTCount, startESTidx, numOwnESTs, estAnalyzer,
                 false, totalESTCount) {
    // Nothing else to be done for now in the constructor.
}

void
PMSTHeapCache::popBestEntry(int& srcESTidx, int& destESTidx,
                            float& metric, int& alignmentData) {
    getBestEntry(srcESTidx, destESTidx, metric, alignmentData);
    // Make sure we found an entry
    if (srcESTidx != -1) {
        // Remove that entry from the cache
        popCache();
    }
}

#endif

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